We aim to develop a voxelomic atlas of the brain. We will leverage high-resolution, multi-spectral ex-vivo imaging data from Magnetic Resonance Imaging (MRI) in combination with deep learning techniques, to compare single-voxel data between individuals. The atlas will serve as a tool to interpret single-voxel neuroanatomical variability. The project will build on preliminary work in sample preparation and data processing techniques.
Buschmann, B., Dogaru, A., Eisemann, E., Weinmann, M., & Egger, B. (2025). RANRAC: Robust Neural Scene Representations via Random Ray Consensus. In Aleš Leonardis, Elisa Ricci, Stefan Roth, Olga Russakovsky, Torsten Sattler, Gül Varol (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (pp. 126-143). Milan, IT: Springer Science and Business Media Deutschland GmbH.
Gardner, J.A., Kashin, E., Egger, B., & Smith, W.A. (2025). The Sky’s the Limit: Relightable Outdoor Scenes via a Sky-Pixel Constrained Illumination Prior and Outside-In Visibility. In Aleš Leonardis, Elisa Ricci, Stefan Roth, Olga Russakovsky, Torsten Sattler, Gül Varol (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (pp. 126-143). Milan, ITA: Springer Science and Business Media Deutschland GmbH.
Namayega, C., Borotikar, B., Menten, M., Gibbon, V., Thusini, X., Egger, B.,... Mutsvangwa, T.E. (2025). Capturing Complexity of the Foot Arch Bones: Evaluation of a Statistical Modelling Framework for Learning Shape, Pose and Intensity Features in a Continuous Domain. In Udunna Anazodo, Naren Akash, Moritz Fuchs, Celia Cintas, Alessandro Crimi, Tinahse Mutsvangwa, Farouk Dako, Willam Ogallo (Eds.), Medical Information Computing. First MICCAI Meets Africa Workshop, MImA 2024, and First MICCAI Student Board Workshop on Empowering Medical Information Computing and Research through Early-Career Expertise, EMERGE 2024, Held in Conjunction with MICCAI 2024, Marrakesh, Morocco, October 6, 2024, Revised Selected Papers (pp. 153-163). Marrakesh, MA: Cham: Springer.
Weiherer, M., & Egger, B. (2025). MATÉRN KERNELS FOR TUNABLE IMPLICIT SURFACE RECONSTRUCTION. In 13th International Conference on Learning Representations, ICLR 2025 (pp. 66102-66123). Singapore, SGP: International Conference on Learning Representations, ICLR.
Weiherer, M., von Riedheim, A., Brébant, V., Egger, B., & Palm, C. (2025). iRBSM: A Deep Implicit 3D Breast Shape Model. In Christoph Palm, Katharina Breininger, Thomas Deserno, Heinz Handels, Andreas Maier, Klaus H. Maier-Hein, Thomas M. Tolxdorff (Eds.), Bildverarbeitung für die Medizin 2025. Proceedings, German Conference on Medical Image Computing, Regensburg March 09-11, 2025 (pp. 38-43). Regensburg, DE: Cham: Springer.
Li, S., Schieber, H., Corell, N., Egger, B., Kreimeier, J., & Roth, D. (2024). GBOT: Graph-Based 3D Object Tracking for Augmented Reality-Assisted Assembly Guidance. In Proceedings - 2024 IEEE Conference on Virtual Reality and 3D User Interfaces, VR 2024 (pp. 513-523). Orlando, FL, US: Institute of Electrical and Electronics Engineers Inc..
Ni, H., Egger, B., Lohit, S., Cherian, A., Wang, Y., Koike-Akino, T.,... Marks, T.K. (2024). TI2V-Zero: Zero-Shot Image Conditioning for Text-to-Video Diffusion Models. In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition (pp. 9015-9025). Seattle, WA, US: IEEE Computer Society.
Nishimura, T., Dogaru, A., & Egger, B. (2024). ArCSEM: Artistic Colorization of SEM Images via Gaussian Splatting. In Proceedings of the AI for Visual Arts Workshop and Challenges (AI4VA) in conjunction with European Conference on Computer Vision (ECCV) 2024, Milano, Italy. Mailand, IT.
Penk, D., Horn, M., Strohmeyer, C., Egger, B., Stamminger, M., & Bauer, F. (2024). AbSynth: Using Abstract Image Synthesis for Synthetic Training. In Petia Radeva, Antonino Furnari, Kadi Bouatouch, A. Augusto Sousa (Eds.), Proceedings of the International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (pp. 718-729). Rome, ITA: Science and Technology Publications, Lda.
Shetty, K., Birkhold, A., Egger, B., Jaganathan, S., Strobel, N., Kowarschik, M., & Maier, A. (2024). HOOREX: Higher Order Optimizers for 3D Recovery from X-Ray Images. In Andreas K. Maier, Julia A. Schnabel, Pallavi Tiwari, Oliver Stegle (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (pp. 115-124). Honolulu, HI, USA: Springer Science and Business Media Deutschland GmbH.
Shetty, K., Birkhold, A., Jaganathan, S., Strobel, N., Kowarschik, M., Maier, A., & Egger, B. (2023). PLIKS: A Pseudo-Linear Inverse Kinematic Solver for 3D Human Body Estimation. In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition (pp. 574-584). Vancouver, BC, CA: IEEE Computer Society.
Marcus, R., Knoop, N., Egger, B., & Stamminger, M. (2022). A Lightweight Machine Learning Pipeline for LiDAR-simulation. In DELTA: PROCEEDINGS OF THE 3RD INTERNATIONAL CONFERENCE ON DEEP LEARNING THEORY AND APPLICATIONS (pp. 176-183). Lisbon, PT: SETUBAL: SCITEPRESS.
Medin, S.C., Egger, B., Cherian, A., Wang, Y., Tenenbaum, J.B., Liu, X., & Marks, T.K. (2022). MOST-GAN: 3D Morphable StyleGAN for Disentangled Face Image Manipulation. In THIRTY-SIXTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE / THIRTY-FOURTH CONFERENCE ON INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE / THE TWELVETH SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE (pp. 1962-1971). PALO ALTO: ASSOC ADVANCEMENT ARTIFICIAL INTELLIGENCE.
Egger, B., Sutherland, S., Medin, S.C., & Tenenbaum, J. (2021). Identity-Expression Ambiguity in 3D Morphable Face Models. In 2021 16TH IEEE INTERNATIONAL CONFERENCE ON AUTOMATIC FACE AND GESTURE RECOGNITION (FG 2021). NEW YORK: IEEE.
Shetty, K., Birkhold, A., Strobel, N., Egger, B., Jaganathan, S., Kowarschik, M., & Maier, A. (2021). Deep Learning Compatible Differentiable X-ray Projections for Inverse Rendering. In Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 290-295). Regensburg, DE: Springer Science and Business Media Deutschland GmbH.
Smith, W.A.P., Seck, A., Dee, H., Tiddeman, B., Tenenbaum, J.B., & Egger, B. (2020). A morphable face Albedo model. In Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition (pp. 5010-5019). Virtual, Online, USA: IEEE Computer Society.
I study how humans and machines can model and perceive 3D shapes and faces.
Research Projects
J111: Voxelomic Atlas: Single-Voxel Spatio-Spectral Homology Matching
(FAU Funds)
2025
2024
2023
2022
2021
2020
Related Research Fields
Contact: