In my group, we are working at different topics concerning machine learning, pattern recognition, and artificial intelligence applied to medical imaging. Specifically, we are interested in how we can work in settings with limited data and/or sparse labels for a number of clinical challenges, both supporting clinical workflows and allowing for new scientific insights.
Research projects
Human in the loop labeling
Image Analysis for a Digital Twin for Rheumatic Diseases
Arbogast, N., Kordon, F.J., Kunze, H., Swartman, B., El Barbari, J.S., & Breininger, K. (2022). Towards Weakly Supervised Segmentation of Orthopaedic X-ray Images Using Constrained-CNN Losses. In Maier-Hein K, Deserno TM, Handels H, Maier A, Palm C, Tolxdorff T (Hrg.), Bildverarbeitung für die Medizin 2022 (S. 135--140). Heidelberg, DE: Wiesbaden: Springer Fachmedien Wiesbaden.
Fu, W., Husvogt, L., Breininger, K., Schaffert, R., Abu-Qamar, O., Fujimoto, J.G., & Maier, A. (2022). Form Follows Function: Smart Network Design Enables Zero-shot Network Reuse. In Klaus Maier-Hein, Thomas M. Deserno, Heinz Handels, Andreas Maier, Christoph Palm, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 121-126). Heidelberg, DEU: Springer Science and Business Media Deutschland GmbH.
Kunzmann, S., Marzahl, C., Denzinger, F., Bertram, C., Klopfleisch, R., Breininger, K.,... Maier, A. (2022). First Steps on Gamification of Lung Fluid Cells Annotations in the Flower Domain. In Klaus Maier-Hein, Thomas M. Deserno, Heinz Handels, Andreas Maier, Christoph Palm, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 223-228). Heidelberg, DEU: Springer Science and Business Media Deutschland GmbH.
Ploner, S., Chen, S., Won, J., Husvogt, L., Breininger, K., Schottenhamml, J.,... Maier, A. (2022). A Spatiotemporal Model for Precise and Efficient Fully-Automatic 3D Motion Correction in OCT. In Linwei Wang, Qi Dou, P. Thomas Fletcher, Stefanie Speidel, Shuo Li (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (pp. 517-527). Singapore, SGP: Springer Science and Business Media Deutschland GmbH.
Schlereth, M., Stromer, D., Breininger, K., Wagner, A., Tan, L., Maier, A., & Knieling, F. (2022). Automatic Classification of Neuromuscular Diseases in Children Using Photoacoustic Imaging. In Klaus Maier-Hein, Thomas M. Deserno, Heinz Handels, Andreas Maier, Christoph Palm, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 285-290). Heidelberg, DEU: Springer Science and Business Media Deutschland GmbH.
Wilm, F., Marzahl, C., Breininger, K., & Aubreville, M. (2022). Domain Adversarial RetinaNet as a Reference Algorithm for the MItosis DOmain Generalization Challenge. In Marc Aubreville, David Zimmerer, Mattias Heinrich (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (pp. 5-13). Strasbourg, FRA: Springer Science and Business Media Deutschland GmbH.
Öttl, M., Mönius, J., Marzahl, C., Rübner, M., Geppert, C., Hartmann, A.,... Breininger, K. (2022). Superpixel Pre-segmentation of HER2 Slides for Efficient Annotation. In Klaus Maier-Hein, Thomas M. Deserno, Heinz Handels, Andreas Maier, Christoph Palm, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 254-259). Heidelberg, DEU: Springer Science and Business Media Deutschland GmbH.
2021
Bertram, C.A., Donovan, T.A., Tecilla, M., Bartenschlager, F., Fragoso, M., Wilm, F.,... Aubreville, M. (2021). Dataset on Bi- and Multi-nucleated Tumor Cells in Canine Cutaneous Mast Cell Tumors. In Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 134-139). Regensburg, DE: Springer Science and Business Media Deutschland GmbH.
Denzinger, F., Wels, M., Breininger, K., Gülsün, M.A., Schöbinger, M., André, F.,... Maier, A. (2021). Abstract: Automatic CAD-RADS Scoring using Deep Learning. In Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 104-). Regensburg, DEU: Springer Science and Business Media Deutschland GmbH.
Marzahl, C., Bertram, C.A., Wilm, F., Voigt, J., Barton, A.K., Klopfleisch, R.,... Aubreville, M. (2021). Cell Detection for Asthma on Partially Annotated Whole Slide Images: Learning to be EXACT. In Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 147-152). Regensburg, DE: Springer Science and Business Media Deutschland GmbH.
Marzahl, C., Wilm, F., Dressler, F.F., Tharun, L., Perner, S., Bertram, C.A.,... Breininger, K. (2021). Robust Quad-Tree based Registration on Whole Slide Images. In Proceedings of the MICCAI Computational Pathlogy (COMPAY) Workshop (pp. 181-190).
Theelke, L., Wilm, F., Marzahl, C., Bertram, C.A., Klopfleisch, R., Maier, A.,... Breininger, K. (2021). Iterative Cross-Scanner Registration for Whole Slide Images. In 2021 IEEE/CVF INTERNATIONAL CONFERENCE ON COMPUTER VISION WORKSHOPS (ICCVW 2021) (pp. 582-590). LOS ALAMITOS: IEEE COMPUTER SOC.
Wilm, F., Bertram, C.A., Marzahl, C., Bartel, A., Donovan, T.A., Assenmacher, C.A.,... Aubreville, M. (2021). Influence of Inter-Annotator Variability on Automatic Mitotic Figure Assessment. In Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 241-246). Regensburg, DE: Springer Science and Business Media Deutschland GmbH.
2020
Bootwala, A., Breininger, K., Maier, A., & Christlein, V. (2020). Assistive Diagnosis in Opthalmology Using Deep Learning-Based Image Retrieval. In Thomas Tolxdorff; Thomas M. Deserno; Heinz Handels; Andreas Maier; Klaus H. Maier-Hein; Christoph Palm (Eds.), Bildverarbeitung für die Medizin 2020. (pp. 144-149). Wiesbaden: Springer Vieweg.
Breininger, K., Pfister, M., Kowarschik, M., & Maier, A. (2020). Move Over There: One-Click Deformation Correction for Image Fusion During Endovascular Aortic Repair. In Anne L. Martel, Purang Abolmaesumi, Danail Stoyanov, Diana Mateus, Maria A. Zuluaga, S. Kevin Zhou, Daniel Racoceanu, Leo Joskowicz (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (pp. 713-723). Lima, PE: Springer Science and Business Media Deutschland GmbH.
Denzinger, F., Wels, M., Breininger, K., Gülsün, M.A., Schöbinger, M., Andre, F.,... Maier, A. (2020). Automatic CAD-RADS Scoring using Deep Learning. In Martel AL, Abolmaesumi P, Stoyanov D, Mateus D, Zuluaga MA, Zhou SK, Racoceanu D, Joskowicz L (Eds.), Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. Lima, Peru: Cham: Springer.
In my group, we are working at different topics concerning machine learning, pattern recognition, and artificial intelligence applied to medical imaging. Specifically, we are interested in how we can work in settings with limited data and/or sparse labels for a number of clinical challenges, both supporting clinical workflows and allowing for new scientific insights.
Research projects
Current Projects
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Recent publications
2023
2022
2021
2020
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