Prof. Dr. Katharina Breininger

2023

• Aubreville, M., Stathonikos, N., Bertram, C.A., Klopfleisch, R., ter Hoeve, N., Ciompi, F.,... Breininger, K. (2023). Mitosis domain generalization in histopathology images — The MIDOG challenge. Medical Image Analysis, 84. https://dx.doi.org/10.1016/j.media.2022.102699
• Pan, Z., Breininger, K., Aubreville, M., Stelzle, F., Maier, A., Oetter, N.,... Sievert, M. (2023). Defining a baseline identification of artifacts in confocal laser endomicroscopy in head and neck cancer imaging. American Journal of Otolaryngology, 44(2). https://dx.doi.org/10.1016/j.amjoto.2022.103779
• Wels, M., Breininger, K., Taubmann, O., Mühlberg, A., Allmendinger, T., Gülsün, M.A.,... Denzinger, F. (2023). How scan parameter choice affects deep learning-based coronary artery disease assessment from computed tomography. Scientific Reports, 13(1), 2563-. https://dx.doi.org/10.1038/s41598-023-29347-9

2022

• Arbogast, N., Kordon, F.J., Kunze, H., Swartman, B., El Barbari, J.S., & Breininger, K. (2022). Towards Weakly Supervised Segmentation of Orthopaedic X-ray Images Using Constrained-CNN Losses. In Maier-Hein K, Deserno TM, Handels H, Maier A, Palm C, Tolxdorff T (Hrg.), Bildverarbeitung für die Medizin 2022 (S. 135--140). Heidelberg, DE: Wiesbaden: Springer Fachmedien Wiesbaden.
• Bertram, C.A., Aubreville, M., Donovan, T.A., Bartel, A., Wilm, F., Marzahl, C.,... Klopfleisch, R. (2022). Computer Assistance: A New Gold Standard for the Mitotic Count? Journal of Comparative Pathology, 191.
• Bertram, C.A., Aubreville, M., Donovan, T.A., Bartel, A., Wilm, F., Marzahl, C.,... Klopfleisch, R. (2022). Computer-assisted mitotic count using a deep learning–based algorithm improves interobserver reproducibility and accuracy. Veterinary Pathology, 59(2), 211-226. https://dx.doi.org/10.1177/03009858211067478
• Bertram, C.A., Marzahl, C., Bartel, A., Stayt, J., Bonsembiante, F., Beeler-Marfisi, J.,... Hill, J. (2022). Cytologic scoring of equine exercise-induced pulmonary hemorrhage: Performance of human experts and a deep learning-based algorithm. Veterinary Pathology. https://dx.doi.org/10.1177/03009858221137582
• Demir, K., May, M., Schmid, A., Uder, M., Breininger, K., Weise, T.,... Yang, S.H. (2022). PoCaP Corpus: A Multimodal Dataset for Smart Operating Room Speech Assistant Using Interventional Radiology Workflow Analysis. In Petr Sojka, Aleš Horák, Ivan Kopeček, Karel Pala (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (pp. 464-475). Brno, CZ: Springer Science and Business Media Deutschland GmbH.
• Denzinger, F., Wels, M., Taubmann, O., Gülsün, M.A., Schöbinger, M., Andre, F.,... Breininger, K. (2022). CAD-RADS Scoring using Deep Learning and Task-Specific Centerline Labeling. In Proceedings of the Medical Imaging with Deep Learning. Zürich, CH.
• Denzinger, F., Wels, M., Taubmann, O., Gülsün, M.A., Schöbinger, M., Andre, F.,... Breininger, K. (2022). CAD-RADS Scoring using Deep Learning and Task-Specific Centerline Labeling. In PMLR (Eds.), PMLR (pp. 315-324). Zürich, CH.
• Folle, L., Bayat, S., Kleyer, A., Fagni, F., Kapsner, L., Schlereth, M.,... Schett, G. (2022, June). CLASSIFICATION OF PSORIATIC ARTHRITIS, SERONEGATIVE RHEUMATOID ARTHRITIS, AND SEROPOSITIVE RHEUMATOID ARTHRITIS USING DEEP LEARNING ON MAGNETIC RESONANCE IMAGING. Paper presentation at EULAR Congress, Kopenhagen, DK.
• Folle, L., Bayat, S., Kleyer, A., Fagni, F., Kapsner, L., Schlereth, M.,... Simon, D. (2022). Advanced neural networks for classification of MRI in psoriatic arthritis, seronegative, and seropositive rheumatoid arthritis. Rheumatology. https://dx.doi.org/10.1093/rheumatology/keac197
• Folle, L., Bayat, S., Kleyer, A., Fagni, F., Kapsner, L., Schlereth, M.,... Simon, D. (2022, November). Neural Networks for Distinguishing Rheumatoid Arthritis from Psoriatic Arthritis by Using Magnetic Resonance Imaging. Poster presentation at ACR Convergence 2022, Philadelphia, PA, US.
• Fu, W., Husvogt, L., Breininger, K., Schaffert, R., Abu-Qamar, O., Fujimoto, J.G., & Maier, A. (2022). Form Follows Function: Smart Network Design Enables Zero-shot Network Reuse. In Klaus Maier-Hein, Thomas M. Deserno, Heinz Handels, Andreas Maier, Christoph Palm, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 121-126). Heidelberg, DEU: Springer Science and Business Media Deutschland GmbH.
• Kist, A., Breininger, K., Dörrich, M., Dürr, S., Schützenberger, A., & Semmler, M. (2022). A single latent channel is sufficient for biomedical glottis segmentation. Scientific Reports, 12(1), 14292-. https://dx.doi.org/10.1038/s41598-022-17764-1
• Kunze, H., Kordon, F.J., Maier, A., & Breininger, K. (2022). Direct and indirect image rotation estimation methods of orthopedic x-ray images. In Išgum I, Colliot O (Eds.), Medical Imaging 2022: Image Processing. San Diego, CA, US: SPIE.
• Kunzmann, S., Marzahl, C., Denzinger, F., Bertram, C., Klopfleisch, R., Breininger, K.,... Maier, A. (2022). First Steps on Gamification of Lung Fluid Cells Annotations in the Flower Domain. In Klaus Maier-Hein, Thomas M. Deserno, Heinz Handels, Andreas Maier, Christoph Palm, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 223-228). Heidelberg, DEU: Springer Science and Business Media Deutschland GmbH.
• Marzahl, C., Hill, J., Stayt, J., Bienzle, D., Welker, L., Wilm, F.,... Bertram, C.A. (2022). Inter-species cell detection - datasets on pulmonary hemosiderophages in equine, human and feline specimens. Scientific Data, 9(1). https://dx.doi.org/10.1038/s41597-022-01389-0
• Ploner, S., Chen, S., Won, J., Husvogt, L., Breininger, K., Schottenhamml, J.,... Maier, A. (2022). A Spatiotemporal Model for Precise and Efficient Fully-Automatic 3D Motion Correction in OCT. In Linwei Wang, Qi Dou, P. Thomas Fletcher, Stefanie Speidel, Shuo Li (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (pp. 517-527). Singapore, SGP: Springer Science and Business Media Deutschland GmbH.
• Popp, A., Taubmann, O., Thamm, F., Ditt, H., Maier, A., & Breininger, K. (2022). Thrombus Detection in Non-Contrast Head CT using Graph Deep Learning. In Bildverarbeitung in der Medizin. Heidelberg.
• Qiu, J., Oppelt, M., Nissen, M., Anneken, L., Breininger, K., & Eskofier, B. (2022). Improving Deep Learning-based Cardiac Abnormality Detection in 12-Lead ECG with Data Augmentation. In : 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC). Glasgow, Scotland, GB.
• Schlereth, M., Stromer, D., Breininger, K., Wagner, A., Tan, L., Maier, A., & Knieling, F. (2022). Automatic Classification of Neuromuscular Diseases in Children Using Photoacoustic Imaging. In Klaus Maier-Hein, Thomas M. Deserno, Heinz Handels, Andreas Maier, Christoph Palm, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 285-290). Heidelberg, DEU: Springer Science and Business Media Deutschland GmbH.
• Schlereth, M., Stromer, D., Mantri, Y., Tsujimoto, J., Breininger, K., Maier, A.,... Jokerst, J.V. (2022). Initial Investigations Towards Non-invasive Monitoring of Chronic Wound Healing Using Deep Learning and Ultrasound Imaging. In Klaus Maier-Hein, Thomas M. Deserno, Heinz Handels, Andreas Maier, Christoph Palm, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 261-266). Heidelberg, DEU: Springer Science and Business Media Deutschland GmbH.
• Wilm, F., Fragoso, M., Marzahl, C., Qiu, J., Puget, C., Diehl, L.,... Aubreville, M. (2022). Pan-tumor CAnine cuTaneous Cancer Histology (CATCH) dataset. Scientific Data, 9(1). https://dx.doi.org/10.1038/s41597-022-01692-w
• Wilm, F., Marzahl, C., Breininger, K., & Aubreville, M. (2022). Domain Adversarial RetinaNet as a Reference Algorithm for the MItosis DOmain Generalization Challenge. In Marc Aubreville, David Zimmerer, Mattias Heinrich (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (pp. 5-13). Strasbourg, FRA: Springer Science and Business Media Deutschland GmbH.
• Öttl, M., Mönius, J., Marzahl, C., Rübner, M., Geppert, C., Hartmann, A.,... Breininger, K. (2022). Superpixel Pre-segmentation of HER2 Slides for Efficient Annotation. In Klaus Maier-Hein, Thomas M. Deserno, Heinz Handels, Andreas Maier, Christoph Palm, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 254-259). Heidelberg, DEU: Springer Science and Business Media Deutschland GmbH.

2021

• Bertram, C.A., Donovan, T.A., Tecilla, M., Bartenschlager, F., Fragoso, M., Wilm, F.,... Aubreville, M. (2021). Dataset on Bi- and Multi-nucleated Tumor Cells in Canine Cutaneous Mast Cell Tumors. In Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 134-139). Regensburg, DE: Springer Science and Business Media Deutschland GmbH.
• Breininger, K., Pfister, M., Kowarschik, M., & Maier, A. (2021). Move Over There One-click Deformation Correction for Image Fusion during Endovascular Aortic Repair. In Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 35-). Regensburg, DE: Springer Science and Business Media Deutschland GmbH.
• Denzinger, F., Wels, M., Breininger, K., Gülsün, M.A., Schöbinger, M., André, F.,... Maier, A. (2021). Abstract: Automatic CAD-RADS Scoring using Deep Learning. In Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 104-). Regensburg, DEU: Springer Science and Business Media Deutschland GmbH.
• Fu, W., Breininger, K., Schaffert, R., Pan, Z., & Maier, A. (2021). “Keep it simple, scholar”: an experimental analysis of few-parameter segmentation networks for retinal vessels in fundus imaging. International Journal of Computer Assisted Radiology and Surgery. https://dx.doi.org/10.1007/s11548-021-02340-1
• Husvogt, L., Abu-Qamar, O., Levine, E., Schottenhamml, J., Ploner, S., Breininger, K.,... Maier, A. (2021, June). Applying nnU-Net to the segmentation of microaneurysms in OCTA data in patients with non-proliferative diabetic retinopathy. Poster presentation at ARVO Annual Meeting 2021, US.
• Marzahl, C., Aubreville, M., Bertram, C.A., Maier, J., Bergler, C., Kröger, C.,... Maier, A. (2021). EXACT: a collaboration toolset for algorithm-aided annotation of images with annotation version control. Scientific Reports, 11(1). https://dx.doi.org/10.1038/s41598-021-83827-4
• Marzahl, C., Bertram, C.A., Wilm, F., Voigt, J., Barton, A.K., Klopfleisch, R.,... Aubreville, M. (2021). Cell Detection for Asthma on Partially Annotated Whole Slide Images: Learning to be EXACT. In Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 147-152). Regensburg, DE: Springer Science and Business Media Deutschland GmbH.
• Marzahl, C., Wilm, F., Dressler, F.F., Tharun, L., Perner, S., Bertram, C.A.,... Breininger, K. (2021). Robust Quad-Tree based Registration on Whole Slide Images. In Proceedings of the MICCAI Computational Pathlogy (COMPAY) Workshop (pp. 181-190).
• Theelke, L., Wilm, F., Marzahl, C., Bertram, C.A., Klopfleisch, R., Maier, A.,... Breininger, K. (2021). Iterative Cross-Scanner Registration for Whole Slide Images. In 2021 IEEE/CVF INTERNATIONAL CONFERENCE ON COMPUTER VISION WORKSHOPS (ICCVW 2021) (pp. 582-590). LOS ALAMITOS: IEEE COMPUTER SOC.
• Wilm, F., Bertram, C.A., Marzahl, C., Bartel, A., Donovan, T.A., Assenmacher, C.A.,... Aubreville, M. (2021). Influence of Inter-Annotator Variability on Automatic Mitotic Figure Assessment. In Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (Eds.), Informatik aktuell (pp. 241-246). Regensburg, DE: Springer Science and Business Media Deutschland GmbH.

2020

• Bootwala, A., Breininger, K., Maier, A., & Christlein, V. (2020). Assistive Diagnosis in Opthalmology Using Deep Learning-Based Image Retrieval. In Thomas Tolxdorff; Thomas M. Deserno; Heinz Handels; Andreas Maier; Klaus H. Maier-Hein; Christoph Palm (Eds.), Bildverarbeitung für die Medizin 2020. (pp. 144-149). Wiesbaden: Springer Vieweg.
• Breininger, K., Pfister, M., Kowarschik, M., & Maier, A. (2020). Move Over There: One-Click Deformation Correction for Image Fusion During Endovascular Aortic Repair. In Anne L. Martel, Purang Abolmaesumi, Danail Stoyanov, Diana Mateus, Maria A. Zuluaga, S. Kevin Zhou, Daniel Racoceanu, Leo Joskowicz (Eds.), Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) (pp. 713-723). Lima, PE: Springer Science and Business Media Deutschland GmbH.
• Denzinger, F., Wels, M., Breininger, K., Gülsün, M.A., Schöbinger, M., Andre, F.,... Maier, A. (2020). Automatic CAD-RADS Scoring using Deep Learning. In Martel AL, Abolmaesumi P, Stoyanov D, Mateus D, Zuluaga MA, Zhou SK, Racoceanu D, Joskowicz L (Eds.), Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. Lima, Peru: Cham: Springer.
• Denzinger, F., Wels, M., Breininger, K., Reidelshöfer, A., Eckert, J., Sühling, M.,... Maier, A. (2020). Abstract: Coronary Artery Plaque Characterization from CCTA Scans Using DL and Radiomics. Paper presentation at BVM Workshop 2020, Berlin, DE.
• Denzinger, F., Wels, M., Breininger, K., Reidelshöfer, A., Eckert, J., Sühling, M.,... Maier, A. (2020). Deep Learning Algorithms for Coronary Artery Plaque Characterisation from CCTA Scans. In Proceedings of the BVM Workshop 2020. Berlin, DE.
• Fu, W., Breininger, K., Pan, Z., & Maier, A. (2020). Degenerating u-net on retinal vessel segmentation: What do we really need? In Thomas Tolxdorff, Thomas M. Deserno, Heinz Handels, Andreas Maier, Klaus H. Maier-Hein, Christoph Palm (Eds.), Informatik aktuell (pp. 33-38). Berlin, DE: Springer.