Prof. Dr. Michael Engel
Institute for Multiscale Simulation

Using computer simulations, data analysis, and machine learning, we study how complex materials self-organize at the atomic, nanoscale, and colloidal levels, with the goal of understanding and deliberately designing new functional materials.
Self-Organized Colloidal Assemblies in Confined Spaces: Formation Mechanism, Internal Structure, and Resulting Optical Properties
(Third Party Funds Single)Project leader: ,
Term: 1. March 2026 - 28. February 2029
Funding source: DFG-Einzelförderung / Sachbeihilfe (EIN-SBH)Spontaneous organization of matter is a remarkable natural process, observed across length scales, from the crystalline architectures of minerals via nanostructured features within biological materials to the complex hierarchical organization of tissues. Understanding the interplay between individual nanoscale building blocks and the emergent structures they self-organize into is of general importance for resolving fundamental processes of structure formation. In addition, self-assembled materials find technological applications as photonic materials exhibiting structural color, phononic crystals to control acoustic properties or heat conduction, or as nanoporous materials to tailor adsorption or catalytic processes. This research proposal focuses on structure formation by colloidal self-assembly in confining elements, especially within spherical emulsion droplets – mimicking, e.g. the formation of minerals, such as framboidal pyrite. In the first funding period, we established thermodynamic and kinetic frameworks for the self-organization of colloidal particles into clusters with unique symmetries and surface geometries, notably icosahedral and decahedral. These configurations demonstrate enhanced thermodynamic stability and are influenced by factors like confinement shape and constituent particle volume fraction. Building on these findings, we propose three strategies for the second funding period to direct colloidal cluster formation actively. First, we aim to tailor the confinement interface to control cluster symmetry, hypothesizing that interface shape alterations can steer the assembly towards specific crystal structures. Second, we plan to exploit thermodynamic principles to manage the order and structure, directing defects within clusters to minimize free energy loss. Third, we intend to manipulate the kinetic formation pathway to guide the structural organization, leveraging an understanding of phase transition processes to preferentially form certain cluster symmetries. Following these strategies will not only provide tools for the self-assembly of complex materials but generate a fundamental understanding of structure formation in confinement. Building on our successful collaboration in the first funding period, we will pursue these goals by close interconnection between experimental observations and event-driven molecular dynamics simulations.NSF-DFG MISSION: Elucidating the dynamics of nanocrystal formation and transformation using multimodal in-situ electron microscopy
(Third Party Funds Single)Project leader:
Term: 1. July 2025 - 30. June 2028
Funding source: DFG-Einzelförderung / Sachbeihilfe (EIN-SBH)Advanced electron microscopy and comprehensive computer simulations allow for the in-depth analysis and prediction of intricate nanostructures in situ and operando. A focal point is material interfaces, where chemical reactions and phase changes occur. Dominated by these interfaces, nanocrystals (NCs) have applications spanning medicine, electronics, and energy, offering heightened efficiency and performance. Although numerous reproducible NC synthesis methods exist, many were developed through trial and error. The exact nucleation mechanism and NC shape evolution remain unclear. NC dissolution also provides insights into corrosion and material degradation. Investigating NC formation and dissolution is complex due to the rapid yet sporadic nucleation process and the data limitations from two-dimensional interfaces compared to three-dimensional structures. Advanced electron microscopy bridges some information gaps but combining it with computer simulations is essential for a holistic understanding. We propose to utilize multimodal and multi-dimensional in-situ electron microscopy combined with multiscale computer simulations to delve into the atomic processes and kinetic pathways of NC formation and transformation under system-realistic and application-relevant conditions. Our proposal comprises two Specific Aims. In Aim 1, we will i) probe symmetry breaking during kinetically controlled synthesis of anisotropic non-precious-metal NCs, analyzing reaction intermediates; ii) initiate in-situ electrochemically-controlled seed-mediated reduction, observing structural evolution; iii) detail kinetic pathways for both seedless and seeded NC growth via multiscale simulations. In Aim 2, our approach is to i) examine dynamic alterations in the composition, shape, and crystalline phase of precision-crafted NC electrocatalysts using in-situ electron microscopy and ii) employ simulations to grasp the structural dynamics and deactivation processes of NC catalysts. Our goal is to offer atomic-level perspectives on the kinetic restructuring of individual NCs. These insights will be crucial for designing NCs with enhanced properties and stability.
2026
- Lee, S., Balazs, D.M., Rayaroth, A., Horta, S., Goodrich, C.P., Engel, M.,... Ibáñez, M. (2026). Reaction Medium as an Architect of Nanocrystal Superlattices. Journal of the American Chemical Society, 148(29), 31245-31252. https://doi.org/10.1021/jacs.6c07859
2025
- Bommineni, P.K., Wang, J., Vogel, N., & Engel, M. (2025). Entropic Trapping of Hard Spheres in Spherical Confinement. Physical Review Letters, 134(19). https://doi.org/10.1103/PhysRevLett.134.198201
- Cheng, Z., Shi, C., Zhao, K., Engel, M., Jones, M.R., & Han, Y. (2025). Precision mapping of equilibrium disclination strain in pentagonally twinned nanostructures. Science Advances, 11(44), eaea9781-. https://doi.org/10.1126/sciadv.aea9781
- Lange Bassani, C., & Engel, M. (2025). Kinetically Trapped Nanocrystals with Symmetry-Preserving Shapes. Journal of the American Chemical Society. https://doi.org/10.1021/jacs.4c17157
- Rayavarapu, A.N., Panchi, N., Engel, M., & Bommineni, P.K. (2025). Formation of hexagonal binary crystals in additive hard disk mixtures. Journal of Chemical Physics, 163(15). https://doi.org/10.1063/5.0293041
- Varela Rosales, N., & Engel, M. (2025). Computational self-assembly of a six-fold chiral quasicrystal. Soft Matter, 21(4), 596-603. https://doi.org/10.1039/d4sm00933a
- Wang, J., Martín González, J., Römling, L., Englisch, S., Mbah Chrameh, F., Bommineni, P.K.,... Vogel, N. (2025). Breakdown of Magic Numbers in Spherical Confinement. ACS nano, 19(12), 11702 - 11711. https://doi.org/10.1021/acsnano.4c11099
2024
- Han, Y., Shi, C., Cheng, Z., Leonardi, A., Zhao, K., Yang, Y.,... Jones, M. (2024). Four-Dimensional Scanning Transmission Electron Microscopy (4D-STEM) for Catalytic Nanoparticles. Microscopy and Microanalysis, 30(2024), 1105-. https://doi.org/10.1093/mam/ozae044.549
- Lange Bassani, C., Engel, M., & Sum, A.K. (2024). Mesomorphology of clathrate hydrates from molecular ordering. Journal of Chemical Physics, 160(19). https://doi.org/10.1063/5.0200516
- Lange Bassani, C., van Anders, G., Banin, U., Baranov, D., Chen, Q., Dijkstra, M.,... Travesset, A. (2024). Nanocrystal Assemblies: Current Advances and Open Problems. ACS nano. https://doi.org/10.1021/acsnano.3c10201
- Shi, C., Cheng, Z., Leonardi, A., Yang, Y., Engel, M., Jones, M.R., & Han, Y. (2024). Preserving surface strain in nanocatalysts via morphology control. Science Advances, 10(39), eadp3788-. https://doi.org/10.1126/sciadv.adp3788
- Tomazic, F., Muttathukattil, A., Nabiyan, A., Schacher, F., & Engel, M. (2024). Geometric Frustration Directs the Self-assembly of Nanoparticles with Crystallized Ligand Bundles. Journal of Physical Chemistry B. https://doi.org/10.1021/acs.jpcb.4c04562
- Varela Rosales, N., & Engel, M. (2024). Tuning the stability of a model quasicrystal and its approximants with a periodic substrate. Soft Matter. https://doi.org/10.1039/d4sm00191e
2023
- Mbah, C.F., Wang, J., Englisch, S., Bommineni, P.K., Varela Rosales, N., Spiecker, E.,... Engel, M. (2023). Early-stage bifurcation of crystallization in a sphere. Nature Communications, 14(1). https://doi.org/10.1038/s41467-023-41001-6
- Nabiyan, A., Muttathukattil, A., Tomazic, F., Pretzel, D., Schubert, U.S., Engel, M., & Schacher, F.H. (2023). Self-Assembly of Core-Shell Hybrid Nanoparticles by Directional Crystallization of Grafted Polymers. ACS nano. https://doi.org/10.1021/acsnano.3c05461
- Pöschel, T., & Engel, M. (2023). Annual Report 2022 of the Institute for Multiscale Simulation. Erlangen: Friedrich-Alexander-University Erlangen-Nürnberg (FAU).
- Varela Rosales, N., Santarossa, A., Engel, M., & Pöschel, T. (2023). Granular binary mixtures improve energy dissipation efficiency of granular dampers. Granular Matter, 25(3). https://doi.org/10.1007/s10035-023-01337-8
- Wang, Y., Chen, J., Li, R., Götz, A., Drobek, D., Przybilla, T.,... Ye, X. (2023). Controlled Self-Assembly of Gold Nanotetrahedra into Quasicrystals and Complex Periodic Supracrystals. Journal of the American Chemical Society, 145(32), 17902-17911. https://doi.org/10.1021/jacs.3c05299
2022
- Bueno, S.L., Leonardi, A., Kar, N., Chatterjee, K., Zhan, X., Chen, C.,... Skrabalak, S.E. (2022). Quinary, Senary, and Septenary High Entropy Alloy Nanoparticle Catalysts from Core@Shell Nanoparticles and the Significance of Intraparticle Heterogeneity. ACS nano. https://doi.org/10.1021/acsnano.2c07787
- Englisch, S., Wang, J., Römling, L., Voß, J., Wirth, J., Mbah Chrameh, F.,... Spiecker, E. (2022). Crystal Structure and Defect Analysis of Colloidal Supraparticles by Lab-Based X-ray Microscopy. Microscopy and Microanalysis, 28, 306-309. https://doi.org/10.1017/S1431927622002008
- Leonardi, A., Neder, R., & Engel, M. (2022). Efficient solution of particle shape functions for the analysis of powder total scattering data. Journal of Applied Crystallography, 55, 329-339. https://doi.org/10.1107/S1600576722001261
- Wang, J., Liu, Y., Bleyer, G., Peukert, W., Görlitzer, E., Englisch, S.,... Vogel, N. (2022). Coloration in Supraparticles Assembled from Polyhedral Metal-Organic Framework Particles. Angewandte Chemie International Edition. https://doi.org/10.1002/anie.202117455
2021
- Dshemuchadse, J., Damasceno, P.F., Phillips, C.L., Engel, M., & Glotzer, S.C. (2021). Moving beyond the constraints of chemistry via crystal structure discovery with isotropic multiwell pair potentials. Proceedings of the National Academy of Sciences of the United States of America, 118(21). https://doi.org/10.1073/pnas.2024034118
- Je, K., Lee, S., Teich, E.G., Engel, M., & Glotzer, S.C. (2021). Entropic formation of a thermodynamically stable colloidal quasicrystal with negligible phason strain. Proceedings of the National Academy of Sciences of the United States of America, 118(7). https://doi.org/10.1073/pnas.2011799118
- Klement, M., Lee, S., Anderson, J.A., & Engel, M. (2021). Newtonian Event-Chain Monte Carlo and Collision Prediction with Polyhedral Particles. Journal of Chemical Theory and Computation. https://doi.org/10.1021/acs.jctc.1c00311
- Leonardi, A., Leoni, M., & Engel, M. (2021). Thermal disorder and mechanical anisotropy in nanocrystals. In ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES (pp. C326-C326). CHESTER: INT UNION CRYSTALLOGRAPHY.
- Liu, Y., Klement, M., Wang, Y., Zhong, Y., Zhu, B., Chen, J.,... Ye, X. (2021). Macromolecular Ligand Engineering for Programmable Nanoprism Assembly. Journal of the American Chemical Society. https://doi.org/10.1021/jacs.1c07281
- Scholz, C., Ldov, A., Pöschel, T., Engel, M., & Loewen, H. (2021). Surfactants and rotelles in active chiral fluids. Science Advances, 7(16). https://doi.org/10.1126/sciadv.abf8998